Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		6rsw (A)
  Conformer 2
(PDB) 		3chw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 204 0.6   107 - 110   137 - 336
2 152 0.96   7 - 106   111 - 136   337 - 373

Sequence


           ____________________________________________________________________________________________________106_________________ 
 6rsw(A) : DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 3chw(A) : **VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH----------dSYVGDEAQSKRGILTLKYPIEgIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 
           ____________________________________________________________________________________________________106_________________ 

           __________136___________________________________________________________________________________________________________ 
 6rsw(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 3chw(A) : FETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP 
           __________136___________________________________________________________________________________________________________ 

           ______________________________________________________________________________________332_______________________________ 
 6rsw(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 3chw(A) : DGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYD 
           ______________________________________________________________________________________332_______________________________ 

           ____________                                                                                                             
 6rsw(A) : EAGPSIVHRKCF                                                                                                             
         :                                                                                                                          
 3chw(A) : ESGPSIVHRKCF                                                                                                             
           ____________                                                                                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.6
Translation
(A) 		-0.1
Closure
(%) 		36.8
Bending Residues
( green ) 		  106 - 112
  136 - 146
  332 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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