DynDom - Protein Domain Motions

Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Actin
Conformer 1 (PDB)	8a2s (C)
Conformer 2 (PDB)	9fjo (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	130	0.82	8 - 33 69 - 140 337 - 369
2	25	0.84	34 - 68
3	196	0.57	141 - 336

Sequence

`__________________________33______________________________68____________________________________________________________` `8a2s(C) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV` `:` `9fjo(A) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-------kDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV` `__________________________33______________________________68____________________________________________________________` `________140_____________________________________________________________________________________________________________` `8a2s(C) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT` `:` `9fjo(A) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT` `________140_____________________________________________________________________________________________________________` `____________________________________________________________________________________336_________________________________` `8a2s(C) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI` `:` `9fjo(A) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI` `____________________________________________________________________________________336_________________________________` `______` `8a2s(C) : VHRKCF` `:` `9fjo(A) : VHR***` `______`

Morph

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	14.4
Translation (A)	-0.4
Closure (%)	94.4
Bending Residues ( green )	33 - 34 68 - 70
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	13.7
Translation (A)	-0.4
Closure (%)	17.3
Bending Residues ( green )	140 - 142 336 - 337
Bending Region Analysis