Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB) 		8a2s (C)
  Conformer 2
(PDB) 		9fjo (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 200 0.54   71 - 72   141 - 338
2 152 0.87   8 - 70   74 - 140   339 - 370

Sequence


           ___________________________________________________________69___________________________________________________________ 
 8a2s(C) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
         :                                                                                                                          
 9fjo(B) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-------kDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 
           ___________________________________________________________69___________________________________________________________ 

           ________140_____________________________________________________________________________________________________________ 
 8a2s(C) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
         :                                                                                                                          
 9fjo(B) : PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVIT 
           ________140_____________________________________________________________________________________________________________ 

           ____________________________________________________________________________________336_________________________________ 
 8a2s(C) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
         :                                                                                                                          
 9fjo(B) : IGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 
           ____________________________________________________________________________________336_________________________________ 

           ______                                                                                                                   
 8a2s(C) : VHRKCF                                                                                                                   
         :                                                                                                                          
 9fjo(B) : VHR***                                                                                                                   
           ______                                                                                                                   

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.0
Translation
(A) 		-0.6
Closure
(%) 		12.7
Bending Residues
( green ) 		  69 - 75
  140 - 142
  336 - 339
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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