Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		8a2t (C)
  Conformer 2
(PDB) 		9fjo (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 210 0.53   101 - 106   138 - 341
2 135 0.95   8 - 100   107 - 137   342 - 363

Sequence


           _______________________________________________________________________________________100______________________________ 
 8a2t(C) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVP 
         :                                                                                                                          
 9fjo(B) : TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR------kDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVP 
           _______________________________________________________________________________________100______________________________ 

           ___136__________________________________________________________________________________________________________________ 
 8a2t(C) : AMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITI 
         :                                                                                                                          
 9fjo(B) : AMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITI 
           ___136__________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________337_________________________________ 
 8a2t(C) : GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIV 
         :                                                                                                                          
 9fjo(B) : GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIV 
           ____________________________________________________________________________________337_________________________________ 

           _____                                                                                                                    
 8a2t(C) : HRKCF                                                                                                                    
         :                                                                                                                          
 9fjo(B) : HR***                                                                                                                    
           _____                                                                                                                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.1
Translation
(A) 		-0.6
Closure
(%) 		8.8
Bending Residues
( green ) 		  100 - 101
  103 - 107
  136 - 141
  337 - 342
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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