DynDom - Protein Domain Motions

Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Actin
Conformer 1 (PDB)	3hbt (A)
Conformer 2 (PDB)	8a2s (C)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	120	0.55	8 - 32 77 - 106 113 - 140 336 - 372
2	38	0.92	33 - 76 107 - 112
3	195	0.76	141 - 335

Sequence

`__________________________32______________________________________76___________________________106___112________________` `3hbt(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--------dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN` `:` `8a2s(C) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVqKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN` `__________________________32______________________________________76___________________________106___112________________` `_____136________________________________________________________________________________________________________________` `3hbt(A) : VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI` `:` `8a2s(C) : VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI` `_____136________________________________________________________________________________________________________________` `____________________________________________________________________________________335_________________________________` `3hbt(A) : TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS` `:` `8a2s(C) : TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS` `____________________________________________________________________________________335_________________________________` `_______` `3hbt(A) : IVHRKCF` `:` `8a2s(C) : IVHRKCF` `_______`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

Show console

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	11.0
Translation (A)	-0.3
Closure (%)	90.0
Bending Residues ( green )	32 - 34 76 - 77 106 - 107 112 - 117
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	16.0
Translation (A)	-0.1
Closure (%)	24.3
Bending Residues ( green )	136 - 144 335 - 336
Bending Region Analysis