Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB) 		3hbt (A)
  Conformer 2
(PDB) 		9fjo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 197 0.9   140 - 336
2 156 0.99   8 - 139   337 - 372

Sequence


           ________________________________________________________________________________________________________________________ 
 3hbt(A) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR-----------dSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 
         :                                                                                                                          
 9fjo(D) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 
           ________________________________________________________________________________________________________________________ 

           ___________139__________________________________________________________________________________________________________ 
 3hbt(A) : TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDG 
         :                                                                                                                          
 9fjo(D) : TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDG 
           ___________139__________________________________________________________________________________________________________ 

           ________________________________________________________________________________________336_____________________________ 
 3hbt(A) : QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEA 
         :                                                                                                                          
 9fjo(D) : QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEA 
           ________________________________________________________________________________________336_____________________________ 

           __________                                                                                                               
 3hbt(A) : GPSIVHRKCF                                                                                                               
         :                                                                                                                          
 9fjo(D) : GPSIVHRKC*                                                                                                               
           __________                                                                                                               

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.1
Translation
(A) 		0.3
Closure
(%) 		24.5
Bending Residues
( green ) 		  139 - 144
  336 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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