Adenylosuccinate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylosuccinate Synthetase
  Conformer 1
(PDB) 		1loo (A)
  Conformer 2
(PDB) 		1iwe (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 277 0.7   31 - 59   61 - 61   64 - 65   91 - 91   98 - 101   130 - 133   157 - 163   167 - 171   232 - 455
2 148 1.26   60 - 60   62 - 63   66 - 90   92 - 97   102 - 129   134 - 156   164 - 166   172 - 231

Sequence


           _______________________________59_____________________________90_____97_101_________________________129_133_____________ 
 1loo(A) : AATGSRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDG 
         :                                                                                                                          
 1iwe(B) : AATGSRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDG 
           _______________________________59_____________________________90_____97_101_________________________129_133_____________ 

           ___152___________166__171_________________________________________________________231___________________________________ 
 1loo(A) : LQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGT 
         :                                                                                                                          
 1iwe(B) : LQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGT 
           ___152___________166__171_________________________________________________________231___________________________________ 

           ________________________________________________________________________________________________________________________ 
 1loo(A) : YPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRI 
         :                                                                                                                          
 1iwe(B) : YPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________                                                  
 1loo(A) : PYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQLF                                                  
         :                                                                                                                          
 1iwe(B) : PYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQLF                                                  
           _______________________________________________________________________                                                  

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.2
Closure
(%) 		94.4
Bending Residues
( green ) 		  59 - 71
  90 - 92
  97 - 98
  101 - 102
  129 - 130
  133 - 134
  152 - 164
  166 - 167
  171 - 172
  231 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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