5A6 Fab Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5A6 Fab Light Chain
  Conformer 1
(PDB) 		6u9s (E)
  Conformer 2
(PDB) 		6wn1 (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 101 3.35   5 - 112
2 99 2.22   113 - 215

Sequence


           ________________________________________________________________________________________________________________112_____ 
 6u9s(E) : DIVMTQSPLSLPVTPGEPASISCKSSQSLLHSRTRKNYLAWYLQKPGQSPQLLIYWASTRESGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYC--KQSYNLYA-FGQGTKLEI-KRTVA 
         :                                                                                                                          
 6wn1(C) : *YELTQ-PASVSVAPGQTAQITCGGN-----SIGRKS-IHWYQHKPGQAPVLVISYDSDRPSGIPERFSGSNSGNTATLTISKVEAGDEADFYCQVRDSDNDHVVFGGGTKLTVLGQPKA 
           ________________________________________________________________________________________________________________114_____ 

           _______________________________________________________________________________________________________                  
 6u9s(E) : APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA-LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE                  
         :                                                                                                                          
 6wn1(C) : APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV--ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG--STVEKTVAPTE                  
           _______________________________________________________________________________________________________                  

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.3
Translation
(A) 		-3.9
Closure
(%) 		96.3
Bending Residues
( green ) 		  112 - 113
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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