Alkaline Thermostable Endoxylanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alkaline Thermostable Endoxylanase
  Conformer 1
(PDB) 		4qce (A)
  Conformer 2
(PDB) 		5eff (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 258 0.4   4 - 29   31 - 47   80 - 85   88 - 89   130 - 134   142 - 165   174 - 351
2 90 0.29   30 - 30   48 - 79   86 - 87   90 - 129   135 - 141   166 - 173

Sequence


           ___________________________29________________47______________________________79____85___________________________________ 
 4qce(A) : VQPFAWQVASLADRYEESFDIGAAVEPHQLNGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHNQVPDWFFLDEEGNPMVEETNEAKRQANKE 
         :                                                                                                                          
 5eff(A) : VQPAAWQVASLADRYEESFDIGAAVEPHQLNGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAIVEFARKNNMNLRFHTLVWHNQVPDWFFLDEEGNPMVEETNEAKRQANKE 
           ___________________________29________________47______________________________79____85___________________________________ 

           ______129__134____141_____________________165_____173___________________________________________________________________ 
 4qce(A) : LLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKLFINDYNTEVTPKRDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDE 
         :                                                                                                                          
 5eff(A) : LLLERLETHIKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGEDAKLFINDYNTEVTPKRDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDE 
           ______129__134____141_____________________165_____173___________________________________________________________________ 

           __________________________________________________________________________________________________________________       
 4qce(A) : IRTSMEMFAGLGLDNQVTELDVSLYGWPPRPAFPTYDAIPQERFQAQADRYNQLFELYEELDADLSSVTFWGIADNHTWLDDRAREYNDGVGKDAPFVFDPNYRVKPAFWRIID       
         :                                                                                                                          
 5eff(A) : IRTSMEMFAGLGLDNQVTELDVSLYGWPPRPAFPTYDAIPQERFQAQADRYNQLFELYEELDADLSSVTFWGIADNHTWLDDRAREYNDGVGKDAPFVFDPNYRVKPAFWRIID       
           __________________________________________________________________________________________________________________       

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.7
Translation
(A) 		0.0
Closure
(%) 		95.5
Bending Residues
( green ) 		  29 - 31
  47 - 48
  79 - 80
  85 - 90
  129 - 130
  134 - 135
  141 - 142
  165 - 166
  173 - 174
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download