Apolipoprotein A-I

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Apolipoprotein A-I
  Conformer 1
(PDB) 		1av1 (D)
  Conformer 2
(PDB) 		2a01 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 38 4.39   83 - 120
2 34 2.16   49 - 82
3 20 2.35   121 - 140
4 40 4.67   145 - 184
5 26 2.88   191 - 216

Sequence


           ________________________________________________________________________________82___________________________________120 
 1av1(D) : ******************************************MLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVE 
         :                                                                                                                          
 2a01(A) : DEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVE 
           ________________________________________________________________________________82___________________________________120 

           ________________139________________________________________182__________________________________________________________ 
 1av1(D) : PLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKL 
         :                                                                                                                          
 2a01(A) : PLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKL 
           ________________139________________________________________182__________________________________________________________ 

           ___                                                                                                                      
 1av1(D) : NTQ                                                                                                                      
         :                                                                                                                          
 2a01(A) : NTQ                                                                                                                      
           ___                                                                                                                      

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 131.6 -6.2 100.0   82 - 85 Bending Region Analysis
1 3 88.2 2.9 49.0   120 - 121 Bending Region Analysis
4 3 177.3 15.3 99.9   139 - 146 Bending Region Analysis
4 5 141.5 3.8 90.9   182 - 192 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 5

Conformer 2 Contact:
Residue 5 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download