A2,3-Sialyltransferase, A2,6-Sialyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name A2,3-Sialyltransferase, A2,6-Sialyltransferase
  Conformer 1
(PDB) 		2ex0 (A)
  Conformer 2
(PDB) 		2ihj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 236 1.3   27 - 249   334 - 335   373 - 386   390 - 397
2 138 2.42   250 - 333   336 - 372   387 - 389   398 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 2ex0(A) : MKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSM 
         :                                                                                                                          
 2ihj(A) : MKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________249_______________ 
 2ex0(A) : EYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
         :                                                                                                                          
 2ihj(A) : EYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
           ______________________________________________________________________________________________________249_______________ 

           __________________________________________________________________333____________________________________372____________ 
 2ex0(A) : TGTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDAL 
         :                                                                                                                          
 2ihj(A) : TGTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTSn---------- 
           __________________________________________________________________333____________________________________372____________ 

           __389___________________________                                                                                         
 2ex0(A) : NNPYVKVMRRLGIIDESQVIFWDSLKQLGGGL                                                                                         
         :                                                                                                                          
 2ihj(A) : -NPYVKVMRRLGIIDESQVIFWDSLKQLG***                                                                                         
           __389___________________________                                                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		24.3
Translation
(A) 		0.0
Closure
(%) 		99.1
Bending Residues
( green ) 		  249 - 250
  333 - 336
  372 - 387
  389 - 398
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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