Beta-1,3-1,4-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-1,3-1,4-Glucanase
  Conformer 1
(PDB) 		3wdt (D)
  Conformer 2
(PDB) 		3wdv (C)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 152 0.44   8 - 72   84 - 100   117 - 126   171 - 184   245 - 290
2 137 0.26   4 - 7   73 - 83   101 - 116   127 - 170   185 - 244   291 - 292

Sequence


           ________7_______________________________________________________________72_________83______________100_____________116__ 
 3wdt(D) : *FYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
         :                                                                                                                          
 3wdv(C) : EFYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
           ________7_______________________________________________________________72_________83______________100_____________116__ 

           _____126________________________________________169____________184______________________________________________________ 
 3wdt(D) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
         :                                                                                                                          
 3wdv(C) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
           _____126________________________________________169____________184______________________________________________________ 

           ___244___________________________________________290______                                                               
 3wdt(D) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
         :                                                                                                                          
 3wdv(C) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
           ___244___________________________________________290______                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.6
Translation
(A) 		0.1
Closure
(%) 		93.5
Bending Residues
( green ) 		  7 - 8
  72 - 74
  83 - 84
  100 - 101
  116 - 117
  126 - 127
  169 - 171
  184 - 185
  244 - 245
  290 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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