Beta-1,3-1,4-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-1,3-1,4-Glucanase
  Conformer 1
(PDB) 		3wdx (B)
  Conformer 2
(PDB) 		3wdt (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 267 0.46   2 - 112   114 - 129   137 - 149   166 - 226   229 - 294
2 26 0.45   113 - 113   130 - 136   150 - 165   227 - 228

Sequence


           _______________________________________________________________________________________________________________112______ 
 3wdx(B) : EFYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGAIDIIE 
         :                                                                                                                          
 3wdt(D) : *FYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
           _______________________________________________________________________________________________________________112______ 

           ________129____136__________149_____________165__________________________________________________________226____________ 
 3wdx(B) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
         :                                                                                                                          
 3wdt(D) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
           ________129____136__________149_____________165__________________________________________________________226____________ 

           __________________________________________________________                                                               
 3wdx(B) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
         :                                                                                                                          
 3wdt(D) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
           __________________________________________________________                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.6
Translation
(A) 		-0.3
Closure
(%) 		90.2
Bending Residues
( green ) 		  112 - 114
  129 - 130
  136 - 137
  149 - 150
  165 - 166
  226 - 229
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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