Beta-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Glucanase
  Conformer 1
(PDB) 		1u0a (B)
  Conformer 2
(PDB) 		1mac (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 182 0.46   305 - 393   405 - 417   420 - 420   423 - 424   426 - 426   434 - 434   437 - 511
2 25 0.82   394 - 404   418 - 419   421 - 422   425 - 425   427 - 433   435 - 436

Sequence


           __________________________________________________________________________________________393________404__________417___ 
 1u0a(B) : QTGGSFFEPFNSYNSGTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTKVQF 
         :                                                                                                                          
 1mac(A) : **GSVFWEPLSYFNPSTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTKVQF 
           ___________________________________________________________________________________________91________102__________115___ 

           __________433_________________________________________________________________________________                           
 1u0a(B) : NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSN                           
         :                                                                                                                          
 1mac(A) : NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMNLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSN                           
           __________131_________________________________________________________________________________                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		0.0
Closure
(%) 		56.2
Bending Residues
( green ) 		  393 - 394
  404 - 405
  417 - 427
  433 - 437
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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