Beta-1,3-1,4-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-1,3-1,4-Glucanase
  Conformer 1
(PDB) 		3wdt (D)
  Conformer 2
(PDB) 		3wdu (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 245 0.42   4 - 104   112 - 128   139 - 149   167 - 226   238 - 238   240 - 294
2 46 0.25   105 - 111   129 - 138   150 - 166   227 - 237   239 - 239

Sequence


           ______________________________________________________________________________________________________104____111________ 
 3wdt(D) : FYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIEG 
         :                                                                                                                          
 3wdu(B) : *YHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIEG 
           ______________________________________________________________________________________________________104____111________ 

           ______128_______138________149______________166_________________________________________________________226________237__ 
 3wdt(D) : VNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKFN 
         :                                                                                                                          
 3wdu(B) : VNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKFN 
           ______128_______138________149______________166_________________________________________________________226________237__ 

           _________________________________________________________                                                                
 3wdt(D) : AQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                                
         :                                                                                                                          
 3wdu(B) : AQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                                
           _________________________________________________________                                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.1
Translation
(A) 		0.0
Closure
(%) 		99.3
Bending Residues
( green ) 		  104 - 105
  111 - 112
  128 - 129
  138 - 139
  149 - 150
  166 - 167
  226 - 228
  237 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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