Beta-1,3-1,4-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-1,3-1,4-Glucanase
  Conformer 1
(PDB) 		3wdt (A)
  Conformer 2
(PDB) 		3wdv (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 234 0.38   1 - 104   114 - 129   144 - 146   167 - 193   198 - 225   235 - 237   242 - 294
2 60 0.25   105 - 113   130 - 143   147 - 166   194 - 197   226 - 234   238 - 241

Sequence


           _______________________________________________________________________________________________________104______113_____ 
 3wdt(A) : EFYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
         :                                                                                                                          
 3wdv(D) : EFYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
           _______________________________________________________________________________________________________104______113_____ 

           ________129___________143____________________166________________________193_197_________________________225______234____ 
 3wdt(A) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
         :                                                                                                                          
 3wdv(D) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
           ________129___________143____________________166________________________193_197_________________________225______234____ 

           241_______________________________________________________                                                               
 3wdt(A) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
         :                                                                                                                          
 3wdv(D) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
           241_______________________________________________________                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.3
Translation
(A) 		0.1
Closure
(%) 		98.6
Bending Residues
( green ) 		  104 - 105
  113 - 114
  129 - 130
  143 - 144
  146 - 147
  166 - 167
  193 - 194
  197 - 198
  225 - 226
  234 - 235
  237 - 238
  241 - 242
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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