Beta-1,3-1,4-Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-1,3-1,4-Glucanase
  Conformer 1
(PDB) 		3wdt (D)
  Conformer 2
(PDB) 		3wdv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 241 0.39   2 - 103   113 - 125   127 - 127   140 - 148   167 - 192   194 - 225   235 - 238   241 - 294
2 52 0.22   104 - 112   126 - 126   128 - 139   149 - 166   193 - 193   226 - 234   239 - 240

Sequence


           ______________________________________________________________________________________________________103______112______ 
 3wdt(D) : *FYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
         :                                                                                                                          
 3wdv(A) : EFYHLVDDYGRGNGFFDKFNFFTGDDPTHGYVDYVSRDVAAGAGLIGERDGRTYMGVDFTNPASGRGRRSVRLESKNTYEHGLIVIDLAHMPGSVCGTWPAFWTLGTGDWPYGGEIDIIE 
           ______________________________________________________________________________________________________103______112______ 

           ____125___________139______148_______________166_______________________192______________________________225______234_238 
 3wdt(D) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
         :                                                                                                                          
 3wdv(A) : GVNDNTFNHMVLHTSDGCTIDNDGFTGNLKTSNCYVYAPGQDANAGCGIEATDPNSYGKGFNSIGGGIYATEITPNGISIWFFPRGSEPGDVLGDNPNPANWDTPAAKFAGGGCDWEGKF 
           ____125___________139______148_______________166_______________________192______________________________225______234_238 

           __________________________________________________________                                                               
 3wdt(D) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
         :                                                                                                                          
 3wdv(A) : NAQRLIFDVTFCGDWAGNVWGIGGCASRAANCVDFVRDNPSAFAESYWLVNSLRVYAP                                                               
           __________________________________________________________                                                               

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.0
Translation
(A) 		0.1
Closure
(%) 		98.0
Bending Residues
( green ) 		  103 - 104
  112 - 113
  125 - 129
  139 - 140
  148 - 149
  166 - 167
  192 - 194
  225 - 226
  234 - 235
  238 - 241
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download