Bifunctional Udp-N-Acetylglucosamine 2-Epimerase/n-Acetylmannosamine Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional Udp-N-Acetylglucosamine 2-Epimerase/n-Acetylmannosamine Kinase
  Conformer 1
(PDB) 		2yi1 (A)
  Conformer 2
(PDB) 		3eo3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 179 0.66   517 - 700
2 100 0.65   408 - 516   701 - 715

Sequence


           _____________________________________________________________________________________________________________516________ 
 2yi1(A) : GTLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAALA 
         :                                                                                                                          
 3eo3(A) : *TLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGIST------------------------dLRTPLSDTLHLPVWVDNDGNCAALA 
           _____________________________________________________________________________________________________________516________ 

           ________________________________________________________________________________________________________________________ 
 2yi1(A) : ERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMS-----aVGALHLIQAAKLGNAKAQSILRT 
         :                                                                                                                          
 3eo3(A) : ERKFGQGKGLENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLDGPDCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNAKAQSILRT 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________700_________________                                                
 2yi1(A) : AGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQALSSVQDVDVVVSDLVDPALLGAASMVLDYT                                                
         :                                                                                                                          
 3eo3(A) : AGTALGLGVVNILHTMNPSLVILSGVLASHYIHIVKDVIRQQALSSVQDVDVVVSDLVDPALLGAASMVLDYT                                                
           _____________________________________________________700_________________                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.2
Translation
(A) 		-0.1
Closure
(%) 		99.8
Bending Residues
( green ) 		  516 - 517
  700 - 701
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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