Catabolite Gene Activator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Catabolite Gene Activator
  Conformer 1
(PDB) 		2wc2 (A)
  Conformer 2
(PDB) 		1j59 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 125 2.16   11 - 50   62 - 140   149 - 154
2 48 2.27   51 - 61   141 - 148   168 - 196

Sequence


           ________________________________________________50_________61___________________________________________________________ 
 2wc2(A) : VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 
         :                                                                                                                          
 1j59(B) : ********PTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 
           ________________________________________________50_________61___________________________________________________________ 

           _________________140_____148___154_______________________________________________________                                
 2wc2(A) : ARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR                                
         :                                                                                                                          
 1j59(B) : ARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVV****                                
           _________________140_____148___154_______________________________________________________                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.0
Translation
(A) 		-0.8
Closure
(%) 		42.1
Bending Residues
( green ) 		  50 - 51
  61 - 62
  140 - 141
  148 - 149
  154 - 168
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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