Cationic Amino Acid Abc Transporter, Periplasmic Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cationic Amino Acid Abc Transporter, Periplasmic Binding Protein
  Conformer 1
(PDB) 		2m8c (A)
  Conformer 2
(PDB) 		1hsl (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 136 1.88   6 - 92   191 - 239
2 98 1.73   93 - 190

Sequence


           _________________________________________________________________________________86_____________________________________ 
 2m8c(A) : AIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGT 
         :                                                                                                                          
 1hsl(B) : AIPQKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVASLKGKRVGVLQGT 
           _________________________________________________________________________________83_____________________________________ 

           ________________________________________________________________190___________________________________________________   
 2m8c(A) : TQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG   
         :                                                                                                                          
 1hsl(B) : TQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPAVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG   
           ________________________________________________________________187___________________________________________________   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		50.1
Translation
(A) 		-0.3
Closure
(%) 		99.4
Bending Residues
( green ) 		  86 - 93
  190 - 195
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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