Citrate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Citrate Synthase
  Conformer 1
(PDB) 		1cts (A)
  Conformer 2
(PDB) 		5cts (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 359 1.25   3 - 57   64 - 286   290 - 291   329 - 349   373 - 431
2 66 2.46   58 - 63   287 - 289   292 - 328   350 - 372

Sequence


           _______________________________________________________57____63_________________________________________________________ 
 1cts(A) : ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 
         :                                                                                                                          
 5cts(A) : ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKGGgGE-PLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAAL 
           _______________________________________________________57____63_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1cts(A) : PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 
         :                                                                                                                          
 5cts(A) : PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________286_______________________________________328__________________349___________ 
 1cts(A) : GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 
         :                                                                                                                          
 5cts(A) : GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAaGADAS---LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNV 
           ___________________________________________286_______________________________________328__________________349___________ 

           _________372_________________________________________________________________                                            
 1cts(A) : LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK                                            
         :                                                                                                                          
 5cts(A) : LLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIAL****                                            
           _________372_________________________________________________________________                                            

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.2
Translation
(A) 		-0.4
Closure
(%) 		85.3
Bending Residues
( green ) 		  57 - 58
  63 - 64
  286 - 287
  289 - 301
  328 - 329
  349 - 350
  372 - 373
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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