Collagen-Like Peptide

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Collagen-Like Peptide
  Conformer 1
(PDB)
1nay (A)
  Conformer 2
(PDB)
1nay (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 28 1.73   108 - 135
2 24 0.41   136 - 159

Sequence


           _______________________131______________________________                                                                 
 1nay(A) : GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDGEWVLLSTFL                                                                 
         :                                                                                                                          
 1nay(C) : GPPGPPGPPGPPGPPGPPGPPGPPGPPGSGYIPEAPRDGQAYVRKDGEWVLLSTFL                                                                 
           _______________________331______________________________                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
94.8
Translation
(A)
2.0
Closure
(%)
99.0
Bending Residues
( green )
  131 - 139
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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