Complement C3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C3
  Conformer 1
(PDB)
2a73 (A)
  Conformer 2
(PDB)
2hr0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 508 1.29   3 - 206   329 - 641
2 120 0.79   207 - 328

Sequence


           ________________________________________________________________________________________________________________________ 
 2a73(A) : SPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHMGNVTFTIPANRE-----rNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGS 
         :                                                                                                                          
 2hr0(A) : SPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHM---tFTIPANRfKSEKGRNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________205____________________________________ 
 2a73(A) : TVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGK 
         :                                                                                                                          
 2hr0(A) : TVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGK 
           _________________________________________________________________________________205____________________________________ 

           ____________________________________________________________________________________328_________________________________ 
 2a73(A) : KVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGV--lRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSP 
         :                                                                                                                          
 2hr0(A) : KVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNLRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSP 
           ____________________________________________________________________________________328_________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(A) : AYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKA 
         :                                                                                                                          
 2hr0(A) : AYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(A) : GRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIWDVVEKA 
         :                                                                                                                          
 2hr0(A) : GRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIWDVVEKA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 2a73(A) : DIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAELQCPQP**                                                                             
         :                                                                                                                          
 2hr0(A) : DIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAELQCPQPAA                                                                             
           ____________________________________________                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
-1.5
Closure
(%)
98.9
Bending Residues
( green )
  205 - 211
  328 - 330
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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