Cop9 Signalosome Complex Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cop9 Signalosome Complex Subunit 2
  Conformer 1
(PDB) 		4d18 (B)
  Conformer 2
(PDB) 		4d18 (J)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 55 0.07   171 - 236
2 139 0.08   32 - 170
3 118 0.06   237 - 354
4 57 0.05   355 - 411
5 29 0.14   412 - 440

Sequence


           ________________________________________________________________________________________________________________________ 
 4d18(B) : VDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWF 
         :                                                                                                                          
 4d18(J) : VDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDAKNDRLWF 
           ________________________________________________________________________________________________________________________ 

           _______159_______________________________________________________________236____________________________________________ 
 4d18(B) : KTNTKLGKLYLEREEYGKLQKILRQLHQSCQtQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 
         :                                                                                                                          
 4d18(J) : KTNTKLGKLYLEREEYGKLQKILRQLHQSCQtQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 
           _______159_______________________________________________________________236____________________________________________ 

           _____________________________________________________________________352________________________________________________ 
 4d18(B) : VLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHG 
         :                                                                                                                          
 4d18(J) : VLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHG 
           _____________________________________________________________________352________________________________________________ 

           ________411________________________________                                                                              
 4d18(B) : RIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA                                                                              
         :                                                                                                                          
 4d18(J) : RIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA                                                                              
           ________411________________________________                                                                              

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 3.1 0.0 89.2   159 - 173 Bending Region Analysis
1 3 2.2 -0.1 70.5   236 - 239 Bending Region Analysis
4 3 2.8 0.0 33.4   352 - 360 Bending Region Analysis
4 5 2.8 0.4 84.7   411 - 418 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 5

Conformer 2 Contact:
Residue 5 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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