Cytochrome B6-F Complex Iron-Sulfur Subunit, Chloroplastic

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome B6-F Complex Iron-Sulfur Subunit, Chloroplastic
  Conformer 1
(PDB) 		9es7 (L)
  Conformer 2
(PDB) 		9es9 (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 124 0.72   54 - 177
2 38 2.37   10 - 53

Sequence


           ___________________________________________45___________________________________________________________________________ 
 9es7(L) : *******NVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGg------TIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE 
         :                                                                                                                          
 9es9(L) : ATSIPADNVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE 
           ___________________________________________45___________________________________________________________________________ 

           ___________________________________________________________                                                              
 9es7(L) : NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA                                                              
         :                                                                                                                          
 9es9(L) : NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA                                                              
           ___________________________________________________________                                                              

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.6
Translation
(A) 		1.7
Closure
(%) 		99.9
Bending Residues
( green ) 		  45 - 55
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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