Cytochrome F

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome F
  Conformer 1
(PDB)
1e2w (B)
  Conformer 2
(PDB)
1cfm (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 0.56   3 - 58   68 - 167   234 - 249
2 75 0.6   59 - 67   168 - 233

Sequence


           _______________________________________________________57____63_________________________________________________________ 
 1e2w(B) : YPVFAQQNYANPREANGRIVCANCHLAQKAVEIEVPQAVLPDTVFEAVIELPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPG 
         :                                                                                                                          
 1cfm(C) : YPVFAQQNYANPREANGRIVCANCHLAQKAVEIEVPQAVLPDTVFEAVIELPYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQKNILVVGPVPG 
           _______________________________________________________57____63_________________________________________________________ 

           ____________________________________________167_______________________________________________________________233_______ 
 1e2w(B) : KKYSEMVVPILSPDPAKNKNVSYLKYPIYFGGNRGRGQVYPDGKKSNFTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLTNNPNVGGFGQA 
         :                                                                                                                          
 1cfm(C) : KKYSEMVVPILSPDPAKNKNVSYLKYPIYFGGNRGRGQVYPDGKKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQTVQADQPLTNNPNVGGFGQA 
           ____________________________________________167_______________________________________________________________233_______ 

           ___________                                                                                                              
 1e2w(B) : ETEIVLQNPAR                                                                                                              
         :                                                                                                                          
 1cfm(C) : ETEIVLQNPAR                                                                                                              
           ___________                                                                                                              

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.0
Translation
(A)
0.1
Closure
(%)
71.5
Bending Residues
( green )
  57 - 60
  63 - 68
  167 - 168
  233 - 234
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download