Diphtheria Toxin Repressor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diphtheria Toxin Repressor
  Conformer 1
(PDB)
1c0w (B)
  Conformer 2
(PDB)
1p92 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 130 0.97   8 - 137
2 75 2.59   150 - 224

Sequence


           ________________________________________________________________________________________________________________________ 
 1c0w(B) : *KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVL 
         :                                                                                                                          
 1p92(A) : MKDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKARLAERLLTDIIGLDINKVHDEACRWEHVMSDEVERRLVKVL 
           ________________________________________________________________________________________________________________________ 

           ______________137___________________________________________________________________________________                     
 1c0w(B) : KDVSRSPFGNPIPGLDELGVaPGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIVDRDGHITLSHNGKDVELLDDLAHTIRIEEL                     
         :                                                                                                                          
 1p92(A) : KDVSRSPFGNPIPGLDELG--pGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIVDRDGHITLSHNGKDVELLDDLAHTIRIEEL                     
           ______________137___________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
126.9
Translation
(A)
5.8
Closure
(%)
76.5
Bending Residues
( green )
  137 - 150
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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