Eco Rv Endonuclease (E.C.3.1.21.4)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Eco Rv Endonuclease (E.C.3.1.21.4)
  Conformer 1
(PDB)
1rve (A)
  Conformer 2
(PDB)
4rve (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 1.22   4 - 16   34 - 140   162 - 239
2 31 1.06   17 - 33   148 - 161

Sequence


           ________11____________________33________________________________________________________________________________________ 
 1rve(A) : SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNI 
         :                                                                                                                          
 4rve(B) : SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNI 
           ________11____________________33________________________________________________________________________________________ 

           ________________140__________________161________________________________________________________________________________ 
 1rve(A) : VYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIY 
         :                                                                                                                          
 4rve(B) : VYPFDQYIAHWIIGYVYTRVATRKSSLKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIY 
           ________________140__________________161________________________________________________________________________________ 

           ____                                                                                                                     
 1rve(A) : RGRK                                                                                                                     
         :                                                                                                                          
 4rve(B) : ****                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.4
Translation
(A)
-0.3
Closure
(%)
38.7
Bending Residues
( green )
  11 - 19
  33 - 35
  140 - 149
  161 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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