Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1ob2 (A)
  Conformer 2
(PDB)
1dg1 (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 4.11   11 - 93   97 - 205
2 189 2.55   94 - 96   206 - 391

Sequence


           __________________________________________________________________________________84____________________________________ 
 1ob2(A) : AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 
         :                                                                                                                          
 1dg1(G) : ********KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 
           __________________________________________________________________________________84____________________________________ 

           __________________________________________________________________________________205___________________________________ 
 1ob2(A) : LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGE 
         :                                                                                                                          
 1dg1(G) : LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGE 
           __________________________________________________________________________________205___________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ob2(A) : EVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVV 
         :                                                                                                                          
 1dg1(G) : EVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVV 
           ________________________________________________________________________________________________________________________ 

           _________________________________                                                                                        
 1ob2(A) : TLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS                                                                                        
         :                                                                                                                          
 1dg1(G) : TLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS                                                                                        
           _________________________________                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
97.9
Translation
(A)
3.0
Closure
(%)
92.2
Bending Residues
( green )
  84 - 98
  205 - 207
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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