Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB) 		1dg1 (G)
  Conformer 2
(PDB) 		2hdn (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 94 0.59   61 - 63   300 - 300   302 - 391
2 137 0.34   65 - 201
3 99 0.45   202 - 299   301 - 301

Sequence


           ___________________________________________________61___________________________________________________________________ 
 1dg1(G) : KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 
         :                                                                                                                          
 2hdn(F) : **************************************************GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 
           ___________________________________________________61___________________________________________________________________ 

           ______________________________________________________________________201_______________________________________________ 
 1dg1(G) : YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 
         :                                                                                                                          
 2hdn(F) : YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIK 
           ______________________________________________________________________201_______________________________________________ 

           ________________________________________________299_____________________________________________________________________ 
 1dg1(G) : ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAM 
         :                                                                                                                          
 2hdn(F) : ETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAM 
           ________________________________________________299_____________________________________________________________________ 

           _________________________                                                                                                
 1dg1(G) : DDGLRFAIREGGRTVGAGVVAKVLS                                                                                                
         :                                                                                                                          
 2hdn(F) : DDGLRFAIREGGRTVGAGVVAKVLG                                                                                                
           _________________________                                                                                                

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 14.3 0.4 0.8   61 - 65 Bending Region Analysis
1 3 9.2 -0.2 22.1   299 - 302 Bending Region Analysis
2 3 13.6 1.4 99.6   201 - 202 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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