F420-Dependent Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name F420-Dependent Oxidoreductase
  Conformer 1
(PDB) 		9g64 (A)
  Conformer 2
(PDB) 		9gkh (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 240 0.28   27 - 233   258 - 301
2 24 0.28   234 - 257

Sequence


           ________________________________________________________________________________________________________________________ 
 9g64(A) : RPFRFGVNLVPTPGVSSWRETCRTAEQSGYDVIAVPDHLGVHSPFIAMMAAAAVTERVQLTTFVLNSAFWNPVLLARDLLTAHELTGGRVEAGLGTGYVRAEFETAGLDWGTAGTRVTRL 
         :                                                                                                                          
 9gkh(B) : RPFRFGVNLVPTPGVSSWRETCRTAEQSGYDVIAVPDALGVHSPFIAMMAAAAVTERVQLTTFVLNSAFWNPVLLARDLLTAHELTGGRVEAGLGTGYVRAEFETAGLDWGTAGTRVTRL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________233_____________________257________________ 
 9g64(A) : ADTLAALRTLAVPTPLMVGGNGDRVLGLAAEHADTVSFSGATlRMITAEAMDERVAFFAERAGERDSQVERNTLVQSVIATDDRAATAKAMRSRMPYLTAEQILQLPTLLIGTPAQMAET 
         :                                                                                                                          
 9gkh(B) : ADTLAALRTLAVPTPLMVGGNGDRVLGLAAEHADTVSFSGAT--mITAEAMDERVAFFAERAGERDSQVERNTLVQSVIATDDRAATAKAMRSRMPYLTAEQILQLPTLLIGTPAQMAET 
           _____________________________________________________________________________233_____________________257________________ 

           ______________________________                                                                                           
 9g64(A) : LLERRERFGFSYVCVQERYLAAFAPVIGLL                                                                                           
         :                                                                                                                          
 9gkh(B) : LLERRERFGFSYVCVQERYLAAFAPVIGLL                                                                                           
           ______________________________                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.2
Translation
(A) 		0.5
Closure
(%) 		99.9
Bending Residues
( green ) 		  233 - 234
  257 - 259
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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