Gamma Crystallin D

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma Crystallin D
  Conformer 1
(PDB) 		1hk0 (X)
  Conformer 2
(PDB) 		4gr7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 87 0.27   82 - 169
2 82 0.39   3 - 81   170 - 172

Sequence


           _______________________________________________________________________________81_______________________________________ 
 1hk0(X) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
         :                                                                                                                          
 4gr7(A) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCRMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
           _______________________________________________________________________________81_______________________________________ 

           _____________________________________________169_____                                                                    
 1hk0(X) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
         :                                                                                                                          
 4gr7(A) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
           _____________________________________________168_____                                                                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.3
Translation
(A) 		-0.3
Closure
(%) 		99.9
Bending Residues
( green ) 		  81 - 84
  169 - 172
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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