Geranyltranstransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Geranyltranstransferase
  Conformer 1
(PDB) 		1rqj (A)
  Conformer 2
(PDB) 		2for (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 223 0.52   25 - 233   295 - 308
2 56 0.62   234 - 294   309 - 318

Sequence


           ________________________________________________________________________________________________________________________ 
 1rqj(A) : MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL 
         :                                                                                                                          
 2for(A) : *DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________233____________________________ 
 1rqj(A) : AFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 
         :                                                                                                                          
 2for(A) : AFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVG---------- 
           _________________________________________________________________________________________212____________________________ 

           ______________________________294___________308____________                                                              
 1rqj(A) : ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK                                                              
         :                                                                                                                          
 2for(A) : -----gKSTYPALLGLEQARKKARDLIDDARQALKQLAEQSLDTSALEALADYIIQRNK                                                              
           ______________________________273___________287____________                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.8
Translation
(A) 		0.5
Closure
(%) 		96.4
Bending Residues
( green ) 		  233 - 234
  294 - 295
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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