Geranylgeranyl Diphosphate Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Geranylgeranyl Diphosphate Synthetase
  Conformer 1
(PDB)
1wmw (C)
  Conformer 2
(PDB)
1wmw (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 243 1.15   4 - 205   217 - 217   229 - 234   261 - 266   296 - 323
2 68 0.79   206 - 216   218 - 219   235 - 260   267 - 295

Sequence


           ________________________________________________________________________________________________________________________ 
 1wmw(C) : MVPAPEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAE 
         :                                                                                                                          
 1wmw(D) : *VPAPEAIRQALQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________205________216________________________ 
 1wmw(C) : GLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLIL 
         :                                                                                                                          
 1wmw(D) : GLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLIL 
           __________________________________________________________________________________205________216________________________ 

           _________________260_______________________________294__________________________________                                 
 1wmw(C) : LRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVER                                 
         :                                                                                                                          
 1wmw(D) : LRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAAL***                                 
           _________________260_______________________________294__________________________________                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.9
Translation
(A)
-0.5
Closure
(%)
49.7
Bending Residues
( green )
  205 - 206
  216 - 235
  260 - 268
  294 - 296
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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