Gh16 Family Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gh16 Family Protein
  Conformer 1
(PDB) 		6xqg (A)
  Conformer 2
(PDB) 		6xqm (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 211 0.33   11 - 130   132 - 132   143 - 162   178 - 211   223 - 262
2 33 0.37   131 - 131   133 - 142   163 - 177   212 - 222

Sequence


           ________________________________________________________________________________________________________________________ 
 6xqg(A) : ****TAPGNEPMAIPSDYKLVWADEFNTPGAPDAKKWRYDTSRNKEGWYNNELQYYAAGRPENVRVENGNLVIETRKERLTSMADYGGQEYSSGKLFTQGLADWQYGYVEVRAKLACGKG 
         :                                                                                                                          
 6xqm(A) : PEGVTAPGNEPMAIPSDYKLVWADEFNTPGAPDAKKWRYDTSRNKEGWYNNELQYYAAGRPENVRVENGNLVIETRKERLTSMADYGGQEYSSGKLFTQGLADWQYGYVEVRAKLACGKG 
           ________________________________________________________________________________________________________________________ 

           ____130_________142_________________162__167_________________________________________211________222_____________________ 
 6xqg(A) : MWPAIWMMASDGSTGWPALGSIDIMEMVAWDPTTIHGTIHTKAYN----tQKGSRTTAADPCGQFHTYSLDWTKDRMLIGVDGHAYMRFDNDHKGNHDTWPFDSPQYLILNVAIGGWG-- 
         :                                                                                                                          
 6xqm(A) : MWPAIWMMASDGSTGWPALGSIDIMEMVAWDPTTIHGTIHTKAYNHVIHTQKGSRTTAADPCGQFHTYSLDWTKDRMLIGVDGHAYMRFDNDHKGNHDTWPFDSPQYLILNVAIGGWGGQ 
           ____130_________142_________________162__167_________________________________________211________222_____________________ 

           _______________________                                                                                                  
 6xqg(A) : --vDAAAFPSKMEVDYVRVYQK*                                                                                                  
         :                                                                                                                          
 6xqm(A) : QGVDAAAFPSKMEVDYVRVYQKR                                                                                                  
           _______________________                                                                                                  

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.9
Translation
(A) 		0.0
Closure
(%) 		91.7
Bending Residues
( green ) 		  130 - 133
  142 - 143
  162 - 163
  167 - 178
  211 - 212
  222 - 223
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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