Glucanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucanase
  Conformer 1
(PDB) 		8wx6 (A)
  Conformer 2
(PDB) 		8ymy (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 259 0.64   86 - 92   126 - 348   350 - 359   369 - 387
2 92 0.28   93 - 125   349 - 349   360 - 368   388 - 436

Sequence


           _________92______________________________125____________________________________________________________________________ 
 8wx6(A) : SANNPWTGFQIFLSPYYANEVAAAAKQITDPTLSSKAASVANIPTFTWLDSVAKIPDLGTYLASASALGKSTGTKQLVQIVIYDLPDRDCAAKASNGEFSIANNGQANYENYIDQIVAQI 
         :                                                                                                                          
 8ymy(A) : SANNPWTGFQIFLSPYYANEVAAAAKQITDPTLSSKAASVANIPTFTWLDSVAKIPDLGTYLASASALGKSTGTKQLVQIVIYDLPDRDCAAKASNGEFSIANNGQANYENYIDQIVAQI 
           _________92______________________________125____________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 8wx6(A) : QQFPDVRVVAVIEPDSLANLVTNLNVQKCANAKTTYLASVNYALTNLAKVGVYMYMDAGHAGWLGWPANLSPAAQLFTQVWQNAGKSPFIKGLATNVANYNALQAASPDPITQGNPNYDE 
         :                                                                                                                          
 8ymy(A) : QQFPDVRVVAVIEPDSLANLVTNLNVQKCANAKTTYLASVNYALTNLAKVGVYMYMDAGHAGWLGWPANLSPAAQLFTQVWQNAGKSPFIKGLATNVANYNALQAASPDPITQGNPNYDE 
           ________________________________________________________________________________________________________________________ 

           ________________________348________359______368________________387____________________________________________________   
 8wx6(A) : IHYINALAPLLQQAGWDATFIVDQGRSGVQNIRQQWGDWCNIKGAGFGTRPTTNTGSQFIDSIVWVKPGGESDGTSNSSSPRYDSTCSLPDAAQPAPEAGTWFQAYFQTLVSAANPPL   
         :                                                                                                                          
 8ymy(A) : IHYINALAPLLQQAGWDATFIVDQGKSGVQNIRQQWGDWCNIKGAGFGTRPTTNTGSQFIDSIVWVKPGGESDGTSNSSSPRYDSTCSLPDAAQPAPEAGTWFQAYFQTLVSAANPPL   
           ________________________348________359______368________________387____________________________________________________   

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.5
Translation
(A) 		0.4
Closure
(%) 		74.9
Bending Residues
( green ) 		  92 - 93
  125 - 126
  348 - 350
  359 - 360
  368 - 369
  387 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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