Glutamate Transporter Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Transporter Homolog
  Conformer 1
(PDB) 		6wyj (A)
  Conformer 2
(PDB) 		6wyk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 233 1.73   80 - 138   227 - 414
2 150 1.61   8 - 79   139 - 216

Sequence


           ___________________________________________________________________________79___________________________________________ 
 6wyj(A) : ***KYIEYPVLQKILIGLILGAIVGLILGHYGYADAVKTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIH-------- 
         :                                                                                                                          
 6wyk(A) : LYRKYIEYPVLQKILIGLILGAIVGLILGHYGYADAVKTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQF 
           ___________________________________________________________________________79___________________________________________ 

           _____________138___________________________________________________________________________216__________________________ 
 6wyj(A) : ------pLVKILLDIVPTNPFGALANGQVCPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVKVVGELAKVTAAVYVGLTLQ 
         :                                                                                                                          
 6wyk(A) : QPKQAPPLVKILLDIVPTNPFGALANGQVCPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVKVVGELAKVTAAVYVGLTLQ 
           _____________138___________________________________________________________________________216__________________________ 

           ________________________________________________________________________________________________________________________ 
 6wyj(A) : ILLVYFVLLKIYGIDPISFIKKAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVSTFFIANALGSHLTVGQQLTIVLTAVLASICTAGVPGAGAIM 
         :                                                                                                                          
 6wyk(A) : ILLVYFVLLKIYGIDPISFIKKAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVSTFFIANALGSHLTVGQQLTIVLTAVLASICTAGVPGAGAIM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________                                                                   
 6wyj(A) : LAMVLESVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                   
         :                                                                                                                          
 6wyk(A) : LAMVLESVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                   
           ______________________________________________________                                                                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.0
Translation
(A) 		0.8
Closure
(%) 		74.5
Bending Residues
( green ) 		  79 - 80
  138 - 139
  216 - 227
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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