Glutamate Transporter Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Transporter Homolog
  Conformer 1
(PDB) 		7ugd (A)
  Conformer 2
(PDB) 		7ugx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 243 0.84   81 - 124   215 - 414
2 158 0.52   5 - 72   125 - 214

Sequence


           ____________________________________________________________________71_______________________________________________121 
 7ugd(A) : *LYRKYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQ 
         :                                                                                                                          
 7ugx(A) : GLYRKYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQ 
           ____________________________________________________________________71_______________________________________________121 

           __________________________________________________________________________________________214___________________________ 
 7ugd(A) : FQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAHVMAHQGVHVVGELAKVTAAVYVGLTL 
         :                                                                                                                          
 7ugx(A) : FQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAHVMAHQGVHVVGELAKVTAAVYVGLTL 
           __________________________________________________________________________________________214___________________________ 

           ________________________________________________________________________________________________________________________ 
 7ugd(A) : QILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTSSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAI 
         :                                                                                                                          
 7ugx(A) : QILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTSSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAI 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________                                                                   
 7ugd(A) : MLAMVLHSVGLPLTDPNVAAAYAiLGIDAILDRGRTMVNVTGDLTGTAIVAKTE                                                                   
         :                                                                                                                          
 7ugx(A) : MLAMVLHSVGLPLTDPNVAAAYAiLGIDAILDRGRTMVNVTGDLTGTAIVAKTE                                                                   
           ______________________________________________________                                                                   

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.7
Translation
(A) 		-0.3
Closure
(%) 		97.7
Bending Residues
( green ) 		  71 - 81
  121 - 128
  214 - 215
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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