DynDom - Protein Domain Motions

Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glutamyl-Trna Synthetase
Conformer 1 (PDB)	1n78 (B)
Conformer 2 (PDB)	9y81 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	311	4.91	3 - 340
2	125	3.31	341 - 466

Sequence

`________________________________________________________________________________________________________________________` `1n78(B) : MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG` `:` `9y81(A) : NVRVRVAPSPTGDPHVGTAYMALFNEIFAKRFKGKMILRIEDTDRTRSRQDYEENIFSALRWCGIQWDEGPDVGGPYGPYRQSERTKIYQGYVETLLKTDCAYKCFATPQELAEMRAV--` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1n78(B) :` `GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPD` `:` `9y81(A) :` `-----------------ASTLGpYTIRLKVPLSGECVFEDYSKGRVVFPWADVDDQVLVKSDGFPTYHFANVIDDHLMGITHVLRGEEWLSSTPKHLLLYEAFGWEPPVFLHMPLLLNPD` `________________________________________________________________________________________________________________________` `____________________________________________________________________________319_________________________________________` `1n78(B) : KTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLRE-AGLSWESEAYLRRAVELMRPRF` `:` `9y81(A) : GTKLSKRKNPTSIFYYRDSGYVKEAFVNFLTLMGYSMEGDEEVYSLERIIETFNPRRIGKSGAVFDIQKLDWMNKHYLNH--------EsPECLLKELQGWLLNDEFFLK-ILPLCQSRI` `____________________________________________________________________________342_________________________________________` `________________________________________________________________________________________________________________________` `1n78(B) : DTLKEFPEKARYLFTE--DYPVSEKAQRKL--EEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPL-RAALTGSLETPGLFEILALLGKERALRRLERALA****` `:` `9y81(A) : TTLAEFINLTSFFFSGLLEYRVEELLPQALSPEKAAILLYSYVKYLEKTDQWTKETCYLGSKWLAQAFNVHHKKAIIPLLYVAITGKKQGLPLFDSIEILGKPRARARLVYAEKLLGGVP` `________________________________________________________________________________________________________________________` `______________________` `1n78(B) : ********************` `:` `9y81(A) : KKLAATVDKFMQREDFEEATFD` `______________________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	179.4
Translation (A)	-1.7
Closure (%)	92.5
Bending Residues ( green )	319 - 345
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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