DynDom - Protein Domain Motions

Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glutamyl-Trna Synthetase
Conformer 1 (PDB)	1n78 (B)
Conformer 2 (PDB)	9z2z (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	334	3.19	3 - 349
2	117	3.45	350 - 466

Sequence

`________________________________________________________________________________________________________________________` `1n78(B) : MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG` `:` `9z2z(A) : NVRVRVAPSPTGDPHVGTAYMALFNEIFAKRFKGKMILRIEDTDRTRSRQDYEENIFSALRWCGIQWDEGPDVGGPYGPYRQSERTKIYQGYVETLLKTDCAYKCFATPQELAEMR----` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1n78(B) : GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPD` `:` `9z2z(A) : AVdRRYRYLSPEEVA--SREAApYTIRLKVPLSGECVFEDYSKGRVVFPWADVDDQVLVKSDGFPTYHFANVIDDHLMGITHVLRGEEWLSSTPKHLLLYEAFGWEPPVFLHMPLLLNPD` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________333___________________________` `1n78(B) : KTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFD` `:` `9z2z(A) : GTKLSKRKNPTSIFYYRDSGYVKEAFVNFLTLMGYSMEGDEEVYSLERIIETFNPRRIGKSGAVFDIQKLDWMNKHYLNHEGSPECLLKELQGWLL-------NDEFFLKILPLCQSRIT` `__________________________________________________________________________________________343___________________________` `________________________________________________________________________________________________________________________` `1n78(B) : TLKEFPEKARYLFTE--DYPVSEKAQRKL--EEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPL-RAALTGSLETPGLFEILALLGKERALRRLERALA*****` `:` `9z2z(A) : TLAEFINLTSFFFSGLLEYRVEELLPQALSPEKAAILLYSYVKYLEKTDQWTKETCYLGSKWLAQAFNVHHKKAIIPLLYVAITGKKQGLPLFDSIEILGKPRARARLVYAEKLLGGVPK` `________________________________________________________________________________________________________________________` `_____________________` `1n78(B) : *******************` `:` `9z2z(A) : KLAATVDKFMQREDFEEATFD` `_____________________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	177.1
Translation (A)	2.8
Closure (%)	94.3
Bending Residues ( green )	333 - 350
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

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