Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamyl-Trna Synthetase
  Conformer 1
(PDB) 		1n78 (B)
  Conformer 2
(PDB) 		9z2x (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 321 3.82   3 - 350
2 116 3.21   351 - 466

Sequence


           ________________________________________________________________________________________________________________________ 
 1n78(B) : **MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE 
         :                                                                                                                          
 9z2x(A) : WENVRVRVAPSPTGDPHVGTAYMALFNEIFAKRFKGKMILRIE--DrQDY----EENIFSALRWCGIQWDEGPDVGGPYGPYRQSERTKIYQGYVETLLKTDCAYKCFATPQELAEMs-- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1n78(B) : KGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRN 
         :                                                                                                                          
 9z2x(A) : ------------PEEVASREAAGQPYTIRLKVPLSGECVFEDYSKGRVVFPWADVDDQVLVKSDGFPTYHFANVIDDHLMGITHVLRGEEWLSSTPKHLLLYEAFGWEPPVFLHMPLLLN 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________332__________________________ 
 1n78(B) : PDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPR 
         :                                                                                                                          
 9z2x(A) : PDGTKLSKRKNPTSIFYYRDSGYVKEAFVNFLTLMGYSMEGDEEVYSLERIIETFNPRRIGKSGAVFDIQKLDWMNKHYLNHEGSPECLLKELQGWLL-------NDEFFLKILPLCQSR 
           ___________________________________________________________________________________________342__________________________ 

           ________________________________________________________________________________________________________________________ 
 1n78(B) : FDTLKEFPEKARYLFTE--DYPVSEKAQRKL--EEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPL-RAALTGSLETPGLFEILALLGKERALRRLERALA***** 
         :                                                                                                                          
 9z2x(A) : ITTLAEFINLTSFFFSGLLEYRVEELLPQALSPEKAAILLYSYVKYLEKTDQWTKETCYLGSKWLAQAFNVHHKKAIIPLLYVAITGKKQGLPLFDSIEILGKPRARARLVYAEKLLGGV 
           ________________________________________________________________________________________________________________________ 

           _______________________                                                                                                  
 1n78(B) : ***********************                                                                                                  
         :                                                                                                                          
 9z2x(A) : PKKLAATVDKFMQREDFEEATFD                                                                                                  
           _______________________                                                                                                  

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		179.4
Translation
(A) 		3.3
Closure
(%) 		93.1
Bending Residues
( green ) 		  332 - 351
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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