DynDom - Protein Domain Motions

Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glutamyl-Trna Synthetase
Conformer 1 (PDB)	1n78 (A)
Conformer 2 (PDB)	9z2x (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	317	3.24	3 - 336 347 - 349
2	120	3.18	344 - 346 350 - 466

Sequence

`________________________________________________________________________________________________________________________` `1n78(A) : MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKE` `:` `9z2x(A) : WENVRVRVAPSPTGDPHVGTAYMALFNEIFAKRFKGKMILRIE--DrQDY----EENIFSALRWCGIQWDEGPDVGGPYGPYRQSERTKIYQGYVETLLKTDCAYKCFATPQELAEMs--` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1n78(A) :` `KGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRN` `:` `9z2x(A) :` `------------PEEVASREAAGQPYTIRLKVPLSGECVFEDYSKGRVVFPWADVDDQVLVKSDGFPTYHFANVIDDHLMGITHVLRGEEWLSSTPKHLLLYEAFGWEPPVFLHMPLLLN` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________331____________346____________` `1n78(A) : PDKTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPR` `:` `9z2x(A) : PDGTKLSKRKNPTSIFYYRDSGYVKEAFVNFLTLMGYSMEGDEEVYSLERIIETFNPRRIGKSGAVFDIQKLDWMNKHYLNHEGSPECLLKELQGWLL-------NDEFFLKILPLCQSR` `__________________________________________________________________________________________341____________349____________` `________________________________________________________________________________________________________________________` `1n78(A) : FDTLKEFPEKARYLFTE--DYPVSEKAQRKL--EEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPL-RAALTGSLETPGLFEILALLGKERALRRLERALA*` `:` `9z2x(A) : ITTLAEFINLTSFFFSGLLEYRVEELLPQALSPEKAAILLYSYVKYLEKTDQWTKETCYLGSKWLAQAFNVHHKKAIIPLLYVAITGKKQGLPLFDSIEILGKPRARARLVYAEKLLGGV` `________________________________________________________________________________________________________________________` `_______________________` `1n78(A) : *********************` `:` `9z2x(A) : PKKLAATVDKFMQREDFEEATFD` `_______________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	178.9
Translation (A)	4.6
Closure (%)	93.9
Bending Residues ( green )	331 - 344 346 - 350
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

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