DynDom - Protein Domain Motions

Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glutamyl-Trna Synthetase
Conformer 1 (PDB)	1gln (A)
Conformer 2 (PDB)	1n78 (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	201	0.87	4 - 64 81 - 84 86 - 89 201 - 203 238 - 304 309 - 323 325 - 355 363 - 378
2	163	0.78	65 - 78 85 - 85 90 - 200 204 - 237 305 - 307
3	95	0.71	324 - 324 356 - 362 379 - 465

Sequence

`______________________________________________________________64____70____________84___89_______________________________` `1gln(A) : MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG` `:` `1n78(A) : MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG` `______________________________________________________________64____70____________84___89_______________________________` `_____________________________________________________________________________200________________________________235_____` `1gln(A) : GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPD` `:` `1n78(A) : GYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPD` `_____________________________________________________________________________200________________________________235_____` `_____________________________________________________________304________________323____________________________354_____3` `1gln(A) : KTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFD` `:` `1n78(A) : KTKISKRKSHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWMNGKYIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFD` `_____________________________________________________________304________________323____________________________354_____3` `62___________376____________________________________________________________________________________________` `1gln(A) : TLKEFPEKARYLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA` `:` `1n78(A) : TLKEFPEKARYLFTEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQPLRAALTGSLETPGLFEILALLGKERALRRLERALA` `62___________376____________________________________________________________________________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.7
Translation (A)	-0.1
Closure (%)	89.4
Bending Residues ( green )	64 - 65 70 - 81 84 - 86 89 - 90 200 - 201 203 - 204 235 - 247 304 - 305 307 - 309
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	9.3
Translation (A)	0.8
Closure (%)	87.2
Bending Residues ( green )	323 - 325 354 - 357 362 - 363 376 - 379
Bending Region Analysis