Glutamyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamyl-Trna Synthetase
  Conformer 1
(PDB)
2cfo (B)
  Conformer 2
(PDB)
2cfo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 249 0.72   4 - 91   94 - 94   123 - 126   147 - 169   174 - 178   193 - 320
2 68 0.5   92 - 93   95 - 122   127 - 146   170 - 173   179 - 192
3 163 0.31   321 - 483

Sequence


           ________________________________________________________________________________________91____________________________12 
 2cfo(B) : TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRY 
         :                                                                                                                          
 2cfo(A) : TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRY 
           ________________________________________________________________________________________91____________________________12 

           2_126_________________146____________________169_173__178___________192_________________________________________________ 
 2cfo(B) : DNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLI 
         :                                                                                                                          
 2cfo(A) : DNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLI 
           2_126_________________146____________________169_173__178___________192_________________________________________________ 

           ____________________________________________________________________________320_________________________________________ 
 2cfo(B) : LNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQ 
         :                                                                                                                          
 2cfo(A) : LNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLWQGAGYAFDEERDRPWLFDLAQ 
           ____________________________________________________________________________320_________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cfo(B) : LLQPGLNTLREAIDQGAVFFIPSVTFDSEAMAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQA 
         :                                                                                                                          
 2cfo(A) : LLQPGLNTLREAIDQGAVFFIPSVTFDSEAMAQLGQPQSATILAYLLEHLPAEPALTVAMGQQLIQQAAKAAGVKKGATMRTLRAALTGAVHGPDLMAAWQILHQRGWDEPRLAAALKQA 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 2cfo(B) : QTTSLEH                                                                                                                  
         :                                                                                                                          
 2cfo(A) : QTTS***                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.6
Translation
(A)
0.0
Closure
(%)
70.2
Bending Residues
( green )
  91 - 95
  122 - 123
  126 - 127
  146 - 147
  169 - 170
  173 - 174
  178 - 179
  192 - 193
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.0
Translation
(A)
-0.1
Closure
(%)
23.7
Bending Residues
( green )
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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