Glycoprotein G

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycoprotein G
  Conformer 1
(PDB) 		5i2s (A)
  Conformer 2
(PDB) 		5i2m (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 309 19.88   3 - 5   7 - 9   21 - 274   299 - 308   312 - 315   326 - 330   357 - 358   363 - 365   382 - 382   384 - 407
2 96 0.74   6 - 6   10 - 20   275 - 298   309 - 311   316 - 325   331 - 356   359 - 362   366 - 381   383 - 383

Sequence


           __3_______________20____________________________________________________________________________________________________ 
 5i2s(A) : KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTALQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITHSIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVT 
         :                                                                                                                          
 5i2m(A) : KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTALQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITHSIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVT 
           __3_______________20____________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5i2s(A) : DAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 
         :                                                                                                                          
 5i2m(A) : DAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPTVHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 
           ________________________________________________________________________________________________________________________ 

           _______________________________274_____________________298__________311___________325____________________________356___3 
 5i2s(A) : DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDW 
         :                                                                                                                          
 5i2m(A) : DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIINGTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDW 
           _______________________________274_____________________298__________311___________325____________________________356___3 

           62________________381________________________________                                                                    
 5i2s(A) : APYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPHIQDA                                                                    
         :                                                                                                                          
 5i2m(A) : APYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSSKAQVFEHPH****                                                                    
           62________________381________________________________                                                                    

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		176.4
Translation
(A) 		-8.8
Closure
(%) 		5.0
Bending Residues
( green ) 		  3 - 13
  20 - 35
  274 - 275
  298 - 309
  311 - 316
  325 - 331
  356 - 359
  362 - 366
  381 - 390
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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