Gtpase Subunit Of Restriction Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtpase Subunit Of Restriction Endonuclease
  Conformer 1
(PDB) 		6ut4 (E)
  Conformer 2
(PDB) 		6ut4 (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 243 0.84   197 - 215   223 - 223   227 - 436   479 - 481   486 - 499
2 139 0.81   216 - 222   224 - 226   437 - 478   482 - 485   500 - 582

Sequence


           __________________215____222_226________________________________________________________________________________________ 
 6ut4(E) : KEDYFRVDMLLNKKGQVILYGPPGTGKTWIARKYVVEETNEKTPGNKWEFITFHQSYSYEEFIEGFRPRT----kIRYVVEDGIFKKIALRALVKGLFELEDATIGKDKIHRLYILLTKK 
         :                                                                                                                          
 6ut4(F) : KEDYFRVDMLLNKKGQVILYGPPGTGKTWIARKYVVEETNEKTPGNKWEFITFHQSYSYEEFIEGFRPRTDNEEKIRYVVEDGIFKKIALRALVKGLFELEDATIGKDKIHRLYILLTKK 
           __________________215____222_226________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________________4 
 6ut4(E) : EPLSPTEYEEYLRLKRYLWELVGGLPKDKLKNLTPKFYLIIDEINRGNISKIFGELITLLEKDKRLGGENQLIVRLPYSGEPFAVPPNLYIIGTMNTADRSIALLDVALRRRFAFIEVEP 
         :                                                                                                                          
 6ut4(F) : EPLSPTEYEEYLRLKRYLWELVGGLPKDKLKNLTPKFYLIIDEINRGNISKIFGELITLLEKDKRLGGENQLIVRLPYSGEPFAVPPNLYIIGTMNTADRSIALLDVALRRRFAFIEVEP 
           _______________________________________________________________________________________________________________________4 

           36_______________________________________478____485___________499_______________________________________________________ 
 6ut4(E) : RPEFLEKENLKKIREKKLKTEDRKRLNEKLNELFSKLGNDNYFLKTLLEKINVRITVVKDRDHRIGHSYFLNVETVEDLHHVWYYEVLPLLMEYFYNDWETIKWVLNEKGKEHGNVFFEK 
         :                                                                                                                          
 6ut4(F) : RPEFLEKENLKKIREKKLKTEDRKRLNEKLNELFSKLGNDNYFLKTLLEKINVRITVVKDRDHRIGHSYFLNVETVEDLHHVWYYEVLPLLMEYFYNDWETIKWVLNEKGKEHGNVFFEK 
           36_______________________________________478____485___________499_______________________________________________________ 

           ______________________________                                                                                           
 6ut4(E) : LRLTGPNGEEAYQLKVLEGDAFIGALKRII                                                                                           
         :                                                                                                                          
 6ut4(F) : LRLTGPNGEEAYQLKVLEGDAFIGALKRII                                                                                           
           ______________________________                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.8
Translation
(A) 		-0.4
Closure
(%) 		98.3
Bending Residues
( green ) 		  215 - 216
  222 - 224
  226 - 227
  436 - 437
  478 - 479
  481 - 482
  485 - 486
  499 - 500
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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