Chaperone Protein Dnak

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chaperone Protein Dnak
  Conformer 1
(PDB) 		2kho (A)
  Conformer 2
(PDB) 		4b9q (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 104 3.25   387 - 497
2 370 3.44   6 - 386
3 93 4.88   506 - 601

Sequence


           ________________________________________________________________________________________________________________________ 
 2kho(A) : **IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLK 
         :                                                                                                                          
 4b9q(B) : GKIIGIDLGTTNSCVAI-dGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSI-pFKIIAADNGDAWVEVKGQK-aPPQISAEVLK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2kho(A) : KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 
         :                                                                                                                          
 4b9q(B) : K-kKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD---gNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2kho(A) : EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEP 
         :                                                                                                                          
 4b9q(B) : EEFKKDQGIDLRNDPLA-qRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKH-nIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTR-p-vQKKVAEFFGKEP 
           ________________________________________________________________________________________________________________________ 

           _______________379______________________________________________________________________________________________________ 
 2kho(A) : RKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD 
         :                                                                                                                          
 4b9q(B) : RKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIET-gGV-tTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGI----rG-pQIEVTFDIDAD 
           _______________379______________________________________________________________________________________________________ 

           ______490_______________________________________________________________________________________________________________ 
 2kho(A) : GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 
         :                                                                                                                          
 4b9q(B) : GILHVSAKDKNSGKEQKITIKASSGLNEDEIQK-vRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAK-qELAQVSQKL-eI 
           ______490_______________________________________________________________________________________________________________ 

           ____                                                                                                                     
 2kho(A) : AQ**                                                                                                                     
         :                                                                                                                          
 4b9q(B) : AQQQ                                                                                                                     
           ____                                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		134.5
Translation
(A) 		5.3
Closure
(%) 		60.1
Bending Residues
( green ) 		  379 - 395
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		157.6
Translation
(A) 		0.5
Closure
(%) 		75.5
Bending Residues
( green ) 		  490 - 526
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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