Heavy Chain Of Antibody Vrc-Ch31

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Heavy Chain Of Antibody Vrc-Ch31
  Conformer 1
(PDB) 		4lsr (H)
  Conformer 2
(PDB) 		6fy2 (H)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 118 3.11   4 - 113
2 91 0.54   114 - 210

Sequence


           ________________________________________________________________________________________________________________________ 
 4lsr(H) : QVQLVQSGAAVRKPGASVTVSCKFAEDDDaPEHFIHFLRQAPGQQLEWLAWMNPTNGAVNYAWYLNGRVTATRDRSMTTAFLEVKSLRSDDTAVYYCARAQKRGRSEW--AYAHWGQGTP 
         :                                                                                                                          
 6fy2(H) : EVQLVQSGAEVKKPGESLKISCK-GSGYRFPSSWIGWVRQVPGKGLEWMGIIYPGDGETRYRASFQGQVTISADQSSNTAYLQWSSLKASDTAMYYCAR-HGRGVREVINAFDIWGQGTM 
           ________________________________________________________________________________________________________________________ 

           __113________________________________________________________________________________________________                    
 4lsr(H) : VVVSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP**                    
         :                                                                                                                          
 6fy2(H) : VTVSSASTKGPSVFPLAPSgTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS                    
           __113________________________________________________________________________________________________                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		38.5
Translation
(A) 		-1.7
Closure
(%) 		99.0
Bending Residues
( green ) 		  113 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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