DynDom - Protein Domain Motions

Histidine Acid Phosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Histidine Acid Phosphatase
Conformer 1 (PDB)	6rxd (B)
Conformer 2 (PDB)	6rxe (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	342	0.52	10 - 47 102 - 235 314 - 316 341 - 344 348 - 513
2	160	0.5	9 - 9 48 - 101 236 - 313 317 - 340 345 - 347

Sequence

`__9____________________________________47___________________________________________________101_________________________` `6rxd(B) : GRYYSSKQPYVAPNDATASSYSKAPKGYGPIYTESMARHGSRGLSSYKYDALLMRMAETAARDGGFKSEAIKAEFVKNLSGITAANVENGYGMLTGQGAQQHYGIGERAYQRNRSLFDQA` `:` `6rxe(B) : GRYYSSKQPYVAPNDATASSYSKAPKGYGPIYTESMARHGSRGLSSYKYDALLMRMAETAARDGGFKSEAIKAEFVKNLSGITAANVENGYGMLTGQGAQQHYGIGERAYQRNRSLFDQA` `__9____________________________________47___________________________________________________101_________________________` `__________________________________________________________________________________________________________235___________` `6rxd(B) : AADGGTIAYQSSGEARATESGENFEKGFNEASGGRLIGNVSAPTNPADSGNGKDFQKNPDTLYFHKVQNPDGTSKVPGTKAYDIANNYQNFVANDATIAGAEKTIGDNVDVKRASHDLLS` `:` `6rxe(B) : AADGGTIAYQSSGEARATESGENFEKGFNEASGGRLIGNVSAPTNPADSGNGKDFQKNPDTLYFHKVQNPDGTSKVPGTKAYDIANNYQNFVANDATIAGAEKTIGDNVDVKRASHDLLS` `__________________________________________________________________________________________________________235___________` `________________________________________________________________313______________________338___344______________________` `6rxd(B) : QIFTEEFLAKLENGEYKWYNTTDGTKKGGKNCAPGADASKDPDACGEVSKKIKSEYDAAMDLYNLYIIAADMHNENTGDHTFAFDQYFQGAYADDARMFAWALDAEDFYEKGPSYAGQNE` `:` `6rxe(B) : QIFTEEFLAKLENGEYKWYNTTDGTKKGGKNCAPGADASKDPDACGEVSKKIKSEYDAAMDLYNLYIIAADMHNENTGDHTFAFDQYFQGAYADDARMFAWALDAEDFYEKGPSYAGQNE` `________________________________________________________________313______________________338___344______________________` `________________________________________________________________________________________________________________________` `6rxd(B) : TYSIAQPLLDDFLNTIDARVNGGSTVATFRFAHAETMMPFAALLGLPGSTQQAPASTTDVYTYGNNEWRGESVTPMAANVQWDVYARKGEDPATGQRYTPIVRMLYNENEVPFRSECTPV` `:` `6rxe(B) : TYSIAQPLLDDFLNTIDARVNGGSTVATFRFAHAETMMPFAALLGLPGSTQQAPASTTDVYTYGNNEWRGESVTPMAANVQWDVYARKGED---gQRYTPIVRMLYNENEVPFRSECTPV` `________________________________________________________________________________________________________________________` `_____________________________` `6rxd(B) : ADGSTWYKLTELKSCLAADHKTLGQDARI` `:` `6rxe(B) : ADGSTWYKLTELKSCLAADHKTLGQDARI` `_____________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	8.9
Translation (A)	-0.1
Closure (%)	94.3
Bending Residues ( green )	9 - 10 47 - 48 101 - 102 235 - 240 313 - 314 316 - 317 338 - 342 344 - 345 347 - 348
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

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