Isoform 3 Of Endonuclease III-Like Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Isoform 3 Of Endonuclease III-Like Protein 1
  Conformer 1
(PDB) 		7rds (A)
  Conformer 2
(PDB) 		7rdt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 113 1.44   117 - 232
2 98 1.4   88 - 116   233 - 309

Sequence


           ________________104_____________________________________________________________________________________________________ 
 7rds(A) : VWEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIP 
         :                                                                                                                          
 7rdt(A) : VWEPQDWQQQLVNIRAMRNKK--------tELNFSS---PKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIP 
           ________________104_____________________________________________________________________________________________________ 

           ________________________232_____________________________________________________________________________________         
 7rds(A) : ASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALCPAAQGLEHHHH         
         :                                                                                                                          
 7rdt(A) : ASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALCPAAQG******         
           ________________________225_____________________________________________________________________________________         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		102.4
Translation
(A) 		0.8
Closure
(%) 		96.5
Bending Residues
( green ) 		  104 - 126
  232 - 234
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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